I dunno, Nintendo is becoming more and more friendly towards this type of stuff. I think they are trying to get back into good graces and stuff with gamers. ((since, well, Sony and Microsoft are kinda flubbing it.)) we will see, but they haven't done anything that crazy or silly for awhile now.
Well they made it obvious that they knew about Project M, and is porting Majoras Mask to 3DS. With this being a thing, who know's when the Mother fans will get Mother 3?